Lines Matching refs:epochs
659 COVER_epoch_info_t epochs; in COVER_computeEpochs() local
660 epochs.num = MAX(1, maxDictSize / k / passes); in COVER_computeEpochs()
661 epochs.size = nbDmers / epochs.num; in COVER_computeEpochs()
662 if (epochs.size >= minEpochSize) { in COVER_computeEpochs()
663 assert(epochs.size * epochs.num <= nbDmers); in COVER_computeEpochs()
664 return epochs; in COVER_computeEpochs()
666 epochs.size = MIN(minEpochSize, nbDmers); in COVER_computeEpochs()
667 epochs.num = nbDmers / epochs.size; in COVER_computeEpochs()
668 assert(epochs.size * epochs.num <= nbDmers); in COVER_computeEpochs()
669 return epochs; in COVER_computeEpochs()
682 const COVER_epoch_info_t epochs = COVER_computeEpochs( in COVER_buildDictionary() local
684 const size_t maxZeroScoreRun = MAX(10, MIN(100, epochs.num >> 3)); in COVER_buildDictionary()
688 (U32)epochs.num, (U32)epochs.size); in COVER_buildDictionary()
692 for (epoch = 0; tail > 0; epoch = (epoch + 1) % epochs.num) { in COVER_buildDictionary()
693 const U32 epochBegin = (U32)(epoch * epochs.size); in COVER_buildDictionary()
694 const U32 epochEnd = epochBegin + epochs.size; in COVER_buildDictionary()