1 //=====================================================
2 // Copyright (C) 2008 Gael Guennebaud <g.gael@free.fr>
3 //=====================================================
4 //
5 // This program is free software; you can redistribute it and/or
6 // modify it under the terms of the GNU General Public License
7 // as published by the Free Software Foundation; either version 2
8 // of the License, or (at your option) any later version.
9 //
10 // This program is distributed in the hope that it will be useful,
11 // but WITHOUT ANY WARRANTY; without even the implied warranty of
12 // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
13 // GNU General Public License for more details.
14 // You should have received a copy of the GNU General Public License
15 // along with this program; if not, write to the Free Software
16 // Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
17 //
18 #ifndef EIGEN2_INTERFACE_HH
19 #define EIGEN2_INTERFACE_HH
20 // #include <cblas.h>
21 #include <Eigen/Core>
22 #include <Eigen/Cholesky>
23 #include <Eigen/LU>
24 #include <Eigen/QR>
25 #include <vector>
26 #include "btl.hh"
27 
28 using namespace Eigen;
29 
30 template<class real, int SIZE=Dynamic>
31 class eigen2_interface
32 {
33 
34 public :
35 
36   enum {IsFixedSize = (SIZE!=Dynamic)};
37 
38   typedef real real_type;
39 
40   typedef std::vector<real> stl_vector;
41   typedef std::vector<stl_vector> stl_matrix;
42 
43   typedef Eigen::Matrix<real,SIZE,SIZE> gene_matrix;
44   typedef Eigen::Matrix<real,SIZE,1> gene_vector;
45 
name(void)46   static inline std::string name( void )
47   {
48     #if defined(EIGEN_VECTORIZE_SSE)
49     if (SIZE==Dynamic) return "eigen2"; else return "tiny_eigen2";
50     #elif defined(EIGEN_VECTORIZE_ALTIVEC)
51     if (SIZE==Dynamic) return "eigen2"; else return "tiny_eigen2";
52     #else
53     if (SIZE==Dynamic) return "eigen2_novec"; else return "tiny_eigen2_novec";
54     #endif
55   }
56 
free_matrix(gene_matrix & A,int N)57   static void free_matrix(gene_matrix & A, int N) {}
58 
free_vector(gene_vector & B)59   static void free_vector(gene_vector & B) {}
60 
matrix_from_stl(gene_matrix & A,stl_matrix & A_stl)61   static BTL_DONT_INLINE void matrix_from_stl(gene_matrix & A, stl_matrix & A_stl){
62     A.resize(A_stl[0].size(), A_stl.size());
63 
64     for (int j=0; j<A_stl.size() ; j++){
65       for (int i=0; i<A_stl[j].size() ; i++){
66         A.coeffRef(i,j) = A_stl[j][i];
67       }
68     }
69   }
70 
vector_from_stl(gene_vector & B,stl_vector & B_stl)71   static BTL_DONT_INLINE  void vector_from_stl(gene_vector & B, stl_vector & B_stl){
72     B.resize(B_stl.size(),1);
73 
74     for (int i=0; i<B_stl.size() ; i++){
75       B.coeffRef(i) = B_stl[i];
76     }
77   }
78 
vector_to_stl(gene_vector & B,stl_vector & B_stl)79   static BTL_DONT_INLINE  void vector_to_stl(gene_vector & B, stl_vector & B_stl){
80     for (int i=0; i<B_stl.size() ; i++){
81       B_stl[i] = B.coeff(i);
82     }
83   }
84 
matrix_to_stl(gene_matrix & A,stl_matrix & A_stl)85   static BTL_DONT_INLINE  void matrix_to_stl(gene_matrix & A, stl_matrix & A_stl){
86     int N=A_stl.size();
87 
88     for (int j=0;j<N;j++){
89       A_stl[j].resize(N);
90       for (int i=0;i<N;i++){
91         A_stl[j][i] = A.coeff(i,j);
92       }
93     }
94   }
95 
matrix_matrix_product(const gene_matrix & A,const gene_matrix & B,gene_matrix & X,int N)96   static inline void matrix_matrix_product(const gene_matrix & A, const gene_matrix & B, gene_matrix & X, int N){
97     X = (A*B).lazy();
98   }
99 
transposed_matrix_matrix_product(const gene_matrix & A,const gene_matrix & B,gene_matrix & X,int N)100   static inline void transposed_matrix_matrix_product(const gene_matrix & A, const gene_matrix & B, gene_matrix & X, int N){
101     X = (A.transpose()*B.transpose()).lazy();
102   }
103 
ata_product(const gene_matrix & A,gene_matrix & X,int N)104   static inline void ata_product(const gene_matrix & A, gene_matrix & X, int N){
105     X = (A.transpose()*A).lazy();
106   }
107 
aat_product(const gene_matrix & A,gene_matrix & X,int N)108   static inline void aat_product(const gene_matrix & A, gene_matrix & X, int N){
109     X = (A*A.transpose()).lazy();
110   }
111 
matrix_vector_product(const gene_matrix & A,const gene_vector & B,gene_vector & X,int N)112   static inline void matrix_vector_product(const gene_matrix & A, const gene_vector & B, gene_vector & X, int N){
113     X = (A*B)/*.lazy()*/;
114   }
115 
atv_product(gene_matrix & A,gene_vector & B,gene_vector & X,int N)116   static inline void atv_product(gene_matrix & A, gene_vector & B, gene_vector & X, int N){
117     X = (A.transpose()*B)/*.lazy()*/;
118   }
119 
axpy(real coef,const gene_vector & X,gene_vector & Y,int N)120   static inline void axpy(real coef, const gene_vector & X, gene_vector & Y, int N){
121     Y += coef * X;
122   }
123 
axpby(real a,const gene_vector & X,real b,gene_vector & Y,int N)124   static inline void axpby(real a, const gene_vector & X, real b, gene_vector & Y, int N){
125     Y = a*X + b*Y;
126   }
127 
copy_matrix(const gene_matrix & source,gene_matrix & cible,int N)128   static inline void copy_matrix(const gene_matrix & source, gene_matrix & cible, int N){
129     cible = source;
130   }
131 
copy_vector(const gene_vector & source,gene_vector & cible,int N)132   static inline void copy_vector(const gene_vector & source, gene_vector & cible, int N){
133     cible = source;
134   }
135 
trisolve_lower(const gene_matrix & L,const gene_vector & B,gene_vector & X,int N)136   static inline void trisolve_lower(const gene_matrix & L, const gene_vector& B, gene_vector& X, int N){
137     X = L.template marked<LowerTriangular>().solveTriangular(B);
138   }
139 
trisolve_lower_matrix(const gene_matrix & L,const gene_matrix & B,gene_matrix & X,int N)140   static inline void trisolve_lower_matrix(const gene_matrix & L, const gene_matrix& B, gene_matrix& X, int N){
141     X = L.template marked<LowerTriangular>().solveTriangular(B);
142   }
143 
cholesky(const gene_matrix & X,gene_matrix & C,int N)144   static inline void cholesky(const gene_matrix & X, gene_matrix & C, int N){
145     C = X.llt().matrixL();
146 //     C = X;
147 //     Cholesky<gene_matrix>::computeInPlace(C);
148 //     Cholesky<gene_matrix>::computeInPlaceBlock(C);
149   }
150 
lu_decomp(const gene_matrix & X,gene_matrix & C,int N)151   static inline void lu_decomp(const gene_matrix & X, gene_matrix & C, int N){
152     C = X.lu().matrixLU();
153 //     C = X.inverse();
154   }
155 
tridiagonalization(const gene_matrix & X,gene_matrix & C,int N)156   static inline void tridiagonalization(const gene_matrix & X, gene_matrix & C, int N){
157     C = Tridiagonalization<gene_matrix>(X).packedMatrix();
158   }
159 
hessenberg(const gene_matrix & X,gene_matrix & C,int N)160   static inline void hessenberg(const gene_matrix & X, gene_matrix & C, int N){
161     C = HessenbergDecomposition<gene_matrix>(X).packedMatrix();
162   }
163 
164 
165 
166 };
167 
168 #endif
169